Review





Similar Products

sequences sequencing data bp average length bp n50 length bp coverage x wgs dnbseq t7  (Complete Genomics Inc)
99
Complete Genomics Inc sequences sequencing data bp average length bp n50 length bp coverage x wgs dnbseq t7
Sequences Sequencing Data Bp Average Length Bp N50 Length Bp Coverage X Wgs Dnbseq T7, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/sequences sequencing data bp average length bp n50 length bp coverage x wgs dnbseq t7/product/Complete Genomics Inc
Average 99 stars, based on 1 article reviews
sequences sequencing data bp average length bp n50 length bp coverage x wgs dnbseq t7 - by Bioz Stars, 2026-05
99/100 stars
  Buy from Supplier
wgs sequencing data  (Broad Clinical Labs)
96
Broad Clinical Labs wgs sequencing data
a) Single nucleotide polymorphisms (SNPs) detected by <t>whole</t> <t>genome</t> <t>sequencing</t> for the three strains when compared to the SC5314 reference genome. b) Overlap between sgRNAs with target binding regions affected by SNPs. The lower left histogram shows the total number of sgRNAs affected for each strain.
Wgs Sequencing Data, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/wgs sequencing data/product/Broad Clinical Labs
Average 96 stars, based on 1 article reviews
wgs sequencing data - by Bioz Stars, 2026-05
96/100 stars
  Buy from Supplier
genome sequence wgs data sets  (Biotechnology Information)
86
Biotechnology Information genome sequence wgs data sets
Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
Genome Sequence Wgs Data Sets, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/genome sequence wgs data sets/product/Biotechnology Information
Average 86 stars, based on 1 article reviews
genome sequence wgs data sets - by Bioz Stars, 2026-05
86/100 stars
  Buy from Supplier
preprocessing whole genome sequencing wgs data  (Biotechnology Information)
86
Biotechnology Information preprocessing whole genome sequencing wgs data
Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
Preprocessing Whole Genome Sequencing Wgs Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/preprocessing whole genome sequencing wgs data/product/Biotechnology Information
Average 86 stars, based on 1 article reviews
preprocessing whole genome sequencing wgs data - by Bioz Stars, 2026-05
86/100 stars
  Buy from Supplier
whole genome shotgun wgs sequence data  (Biotechnology Information)
86
Biotechnology Information whole genome shotgun wgs sequence data
Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
Whole Genome Shotgun Wgs Sequence Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/whole genome shotgun wgs sequence data/product/Biotechnology Information
Average 86 stars, based on 1 article reviews
whole genome shotgun wgs sequence data - by Bioz Stars, 2026-05
86/100 stars
  Buy from Supplier
genome sequencing wgs data  (Pacific Biosciences)
86
Pacific Biosciences genome sequencing wgs data
Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
Genome Sequencing Wgs Data, supplied by Pacific Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/genome sequencing wgs data/product/Pacific Biosciences
Average 86 stars, based on 1 article reviews
genome sequencing wgs data - by Bioz Stars, 2026-05
86/100 stars
  Buy from Supplier
genome sequencing wgs data  (Biotechnology Information)
86
Biotechnology Information genome sequencing wgs data
Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
Genome Sequencing Wgs Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/genome sequencing wgs data/product/Biotechnology Information
Average 86 stars, based on 1 article reviews
genome sequencing wgs data - by Bioz Stars, 2026-05
86/100 stars
  Buy from Supplier
wgs sequencing data  (Biotechnology Information)
86
Biotechnology Information wgs sequencing data
Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
Wgs Sequencing Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/wgs sequencing data/product/Biotechnology Information
Average 86 stars, based on 1 article reviews
wgs sequencing data - by Bioz Stars, 2026-05
86/100 stars
  Buy from Supplier
whole-genome sequence (wgs) data  (Biotechnology Information)
90
Biotechnology Information whole-genome sequence (wgs) data
Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
Whole Genome Sequence (Wgs) Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/whole-genome sequence (wgs) data/product/Biotechnology Information
Average 90 stars, based on 1 article reviews
whole-genome sequence (wgs) data - by Bioz Stars, 2026-05
90/100 stars
  Buy from Supplier

Image Search Results


a) Single nucleotide polymorphisms (SNPs) detected by whole genome sequencing for the three strains when compared to the SC5314 reference genome. b) Overlap between sgRNAs with target binding regions affected by SNPs. The lower left histogram shows the total number of sgRNAs affected for each strain.

Journal: bioRxiv

Article Title: Pooled CRISPRi screening reveals fungal-specific vulnerabilities across environments and genetic backgrounds

doi: 10.64898/2025.12.19.695556

Figure Lengend Snippet: a) Single nucleotide polymorphisms (SNPs) detected by whole genome sequencing for the three strains when compared to the SC5314 reference genome. b) Overlap between sgRNAs with target binding regions affected by SNPs. The lower left histogram shows the total number of sgRNAs affected for each strain.

Article Snippet: WGS sequencing data was analyzed using a modified version of the Broad Institute Funpipe workflow with GATK v4.6.1.0 (van der ), Picard v3.1.0 ( Picard: A Set of Command Line Tools (in Java) for Manipulating High-Throughput Sequencing (HTS) Data and Formats such as SAM/BAM/CRAM and VCF , n.d.), bwa199 v0.7.18 , samtools v1.20 , bcftools v1.19 , bedtools v2.31.0 ( ).

Techniques: Sequencing, Binding Assay

Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from 57 whole-genome samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.

Journal: Journal of Clinical Microbiology

Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods

doi: 10.1128/jcm.01267-25

Figure Lengend Snippet: Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from 57 whole-genome samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.

Article Snippet: A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas).

Techniques: Software

Minimum spanning tree of whole genome-sequenced samples based on two MLST profiles color-coded based on their geographic origin. ( A ) Minimum spanning tree of the WGS samples created using the seven-locus MLST scheme described by Guo et al. . ( B ) Minimum spanning tree of the WGS samples created using the MLST scheme developed in this study.

Journal: Journal of Clinical Microbiology

Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods

doi: 10.1128/jcm.01267-25

Figure Lengend Snippet: Minimum spanning tree of whole genome-sequenced samples based on two MLST profiles color-coded based on their geographic origin. ( A ) Minimum spanning tree of the WGS samples created using the seven-locus MLST scheme described by Guo et al. . ( B ) Minimum spanning tree of the WGS samples created using the MLST scheme developed in this study.

Article Snippet: A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas).

Techniques: